1 Tahrcountry Musings

Thursday, February 24, 2011

Flowering Plants and Pollination by Animals


How many flowering plants are pollinated by animals


Jeff Ollerton,Rachael Winfree, Sam Tarrant

Article first published online: 21 FEB 2011

Oikos

Volume 120, Issue 3, pages 321–326, March 2011

This is a fascinating paper on pollination.

Majority of flowering plants are pollinated by insects and other animals. A minority utilizes abiotic pollen vectors, mainly wind. Plant–pollinator interactions play a significant role in maintaining the functional integrity of most terrestrial ecosystems.

There is no accurate published calculation of the proportion of the ca 352 000 species of angiosperms that interact with pollinators. The estimates vary from 67% to 96% but these are not based on firm data. 
Here an attempt was made by the researchers to estimate the number and proportion of flowering plants that are pollinated by animals using published and unpublished community-level surveys of plant pollination systems.

The researchers say the proportion of animal-pollinated species rises from a mean of 78% in temperate-zone communities to 94% in tropical communities. By correcting for the latitudinal diversity trend in flowering plants, they estimate the global number and proportion of animal pollinated angiosperms as 308 006, which is 87.5% of the estimated species-level diversity of flowering plants. Given current concerns about the decline in pollinators and the possible resulting impacts on both natural communities and agricultural crops, such estimates are vital to both ecologists and policy makers. 


Wednesday, February 23, 2011

More on Wildlife Corridors


The other day I was discussing with my friend Ramesh the pros and cons of corridors. The paper Consequences and Costs of Conservation Corridors was a good starting point for our conversation.

Corridors could alleviate threats from inbreeding depression and demographic stochasticity. Some species require more resources than are available in single refuges. Here a network of refuges connected by corridors may allow persistence. Corridors in riparian forest may constitute an important habitat in its own right.
Now here come the negative impacts. They could transmit contagious diseases. They could be a causative factor for fires, and other catastrophes. They may increase exposure of animals to predation, domestic animals, and poachers. They could prove expensive in economic terms. The researchers say a bridge that would maintain a riparian corridor costs about 13 times as much per lane-mile as would a road that would sever the corridor. Per-unit-area management costs may be larger for corridors than for refuges. Here it may be cheaper to manage some species by moving individuals between refuges rather than by buying and maintaining corridors.
Adequate studies are indeed needed in the field before we recommend the type of corridor.  The researchers say right now a dearth of information on the degree to which different species use corridors makes it difficult to tell which of these potential advantages will be realized in any particular case. Each case must be judged on its own merits because species-environment interactions differ.
Consequences and Costs of Conservation Corridors
DANIEL SIMBERLOFF, JAMES COX
Article first published online: 21 APR 2005
DOI: 10.1111/j.1523-1739.1987.tb00010.x

Sometimes back I had posted an item titled “Tools for modeling wildlife corridors” in my other blog Highrangetidings.blogspot.com (I have discontinued this blog). Ramesh feels that this post needs to be posted here as he feels that it would be of use to the wildlife managers. So guys here it comes

The copyright for the entire description belong to corridordesign.org
Here is what is available at corridordesign.org.  They are best suited for designing corridors in a heterogenous landscape at a regional (e.g. 2 - 500 km long) scale.

CorridorDesigner  provides one method of modeling wildlife corridors with ArcGIS.

Here are some other free tools for modeling wildlife or ecological corridors, connectivity, or habitat.
CIRCUITSCAPE
Circuitscape is a stand-alone Python program which borrows algorithms from circuit theory to predict patterns of movement, gene flow, and genetic differentiation among populations in heterogeneous landscapes. It uses raster habitat maps as input, and predicts connectivity and movement patterns between user-defined points on the landscape. Circuitscape is distributed by Brad McRae of the National Center for Ecological Analysis and Synthesis (NCEAS) at University of California, Santa Barbara.
CONNECTIVITY ANALYSIS TOOLKIT
The Connectivity Analysis Toolkit provides conservation planners with newly-developed tools for both linkage mapping and landscape-level 'centrality' analysis. Centrality refers to a group of landscape metrics that rank the importance of sites as gatekeepers for flow across a landscape network. The Toolkit allows users to develop and compare three contrasting centrality metrics based on input data representing habitat suitability or permeability, in order to determine which areas, across the landscape as a whole, would be priorities for conservation measures that might facilitate connectivity and dispersal. The Toolkit also allows application of these approaches to the more common question of mapping the best habitat linkages between a source and a target patch.
FUNCONN - FUNCTIONAL CONNECTIVITY TOOLS
FunConn is a functional connectivity modeling toolbox for ArcGIS, distributed by Dave Theobald and the Natural Resource Ecology Laboratory at Colorado State University. The goal of the functional connectivity model is to allow landscape connectivity to be examined from a functional perspective. Functional connectivity recognizes that individuals, species or processes respond functionally (or behaviorally) to the physical structure of the landscape. From this perspective, landscape connectivity is specific to a landscape and species/individual/process under investigation.
HABMOD/CONNMOD/ARCRSTATS - HABITAT MODELING TOOLBOX
Formerly called ArcRstats, the HabMod/ConnMod toolboxes produce multivariate habitat prediction rasters using ArcGIS and the open-source R statistical package for implementing classification and regression (CART), generalized linear models (GLM) and generalized additive models (GAM), and includes a connectivity modeling toolbox. The toolbox is distributed by Pat Halpin and the Marine Geospatial Ecology Laboratory at Duke University
CONEFOR SENSINODE
Conefor Sensinode quantifies the importance of habitat areas for the maintenance or improvement of landscape connectivity. It is conceived as a tool for decision-making support in landscape planning and habitat conservation, through the identification and prioritization of critical sites for ecological connectivity.
PATHMATRIX
Path Matrix is a tool for ArcView 3 to compute matrices of effective geographic distances among samples, based on a least-cost path algorithm. It was developed by Nicholas Ray of the Computational and Molecular Population Genetics Lab, University of Bern, Switzerland.
OPENMODELLER
openModeller aims to provide a flexible, user friendly, cross-platform environment where the entire process of conducting a fundamental niche modeling experiment can be carried out. The software includes facilities for reading species occurrence and environmental data, selection of environmental layers on which the model should be based, creating a fundamental niche model and projecting the model into an environmental scenario.
STATMOD ZONE
StatMod is an extension for ArcView 3.3 that helps users create logistic regression and CART models using the statistical packages SAS and S-PLUS. It is distributed by Chris Garard of Utah State University.
MAXENT
Maxent provides a maximum-entropy approach for species habitat modeling. The software takes as input a set of layers or environmental variables (such as elevation, precipitation, etc.), as well as a set of georeferenced occurrence locations, and produces a model of the range of the given species. It is distributed by Princeton University.
GRASP
GRASP (Generalized Regression and Spatial Prediction) is a package for the statistical softwares R and S-PLUS for creating predictive models of species distributions using Generalized Additive Models (GAMs). It is distributed by A. Lehmann, J.R. Leathwick and J.McC. Overton at the Landcare Research Institute, New Zealand.
BIOMAPPER
BioMapper is a stand-alone package for developing ecological niche and habitat suitability models using only a species presence data. It is distributed by Alexandre Hirzel of the Laboratory For Conservation Biology, University of Lausanne, Switzerland.
DESKTOP GARP
DesktopGarp is a software package for biodiversity and ecologic research that allows the user to predict and analyze species distributions using presence data. The package is distributed by the University of Kansas Natural History Museum.
SPATIAL DATA MODELER
Spatial Data Modeler is a collection of geoprocessing tools for adding categorical maps with interval, ordinal, or ratio scale maps to produce a predictive map of where something of interest is likely to occur. The tools include the data-driven methods of Weights of Evidence, Logistic Regression, and two supervised and one unsupervised neural network methods, and a knowledge-driven method Fuzzy Logic.
PATCHMORPH PATCH DELINEATION TOOL
PatchMorph is an extension for ArcMap which delineates habitat patches from a habitat suitability or land cover map.
MARXAN
Marxan delivers decision support for reserve system design. Marxan finds reasonably efficient solutions to the problem of selecting a system of spatially cohesive sites that meet a suite of biodiversity targets.
PANDA
PANDA is a stand-alone application developed to provide a user friendly framework for systematic protected areas network design to ArcGIS users. Through the use of P.A.N.D.A. the designer can explore different hypothetical configurations of a system of protected areas in the planning area.
CLUZ
CLUZ is an ArcView GIS interface that allows users to design protected area networks and conservation landscapes. It can be used for on-screen planning and also acts as a link for the MARXAN conservation planning software. It is currently being developed at DICE and is funded by the British Government through their Darwin Initiative for the Survival of Species.
LINK
LINK is a set of ArcGIS tools designed to analyze habitat patterns across a landscape. LINK uses species habitat matrices to model potential species habitat and habitat diversity. What sets LINK apart from its predecessors is that it uses raster data sources—raster data sources allow LINK to model habitat over a much larger area than its vector based ancestors.
JENNESS ENTERPRISES
Jenness Enterprises has created many extensions for ArcView 3.3 useful to ecological applications. Jeff Jenness created the CorridorDesigner ArcMap extension.
HAWTH'S TOOLS
Hawth's Analysis Tools is an extension for ArcGIS (specifically ArcMap). It is designed to perform spatial analysis and functions that cannot be conveniently accomplished with out-of-the-box ArcGIS. Most of these analysis tools have been written within the context of ecological applications such as movement analysis, resource selection, predator prey interactions and trophic cascades.


Turtles around the World in Distress


A report issued yesterday which is authored by the Wildlife Conservation Society (WCS) and the Turtle Conservation Coalition, has listed 25 turtle species from around the world as endangered. Seventeen of the 25 species are found in Asia, three are from South America, three from Africa, one from Australia, and one from Central America and Mexico.

Distressingly some of the species likeYangtze giant softshell turtle has less than five individuals. Wildlife Conservation Society veterinarians are working overtime with Chinese officials and other partners to breed the last known male/female pair of these giant turtles, which currently reside at China's Suzhou Zoo.

The report recommends better enforcement of existing trade laws, habitat protection, and captive breeding to preventing turtle species from going extinct while bolstering existing populations.

Monday, February 21, 2011

Re-introductions and the Use of simulation program VORTEX


Assessing re-introductions of the African Wild dog (Lycaon pictus) in the Limpopo Valley Conservancy, South Africa, using the stochastic simulation program VORTEX

Lars A. Bach, Rikke B.F. Pedersen, Matt Hayward, Jesper Stagegaard Volker Loeschcke and Cino Pertoldi

Here is a good paper on reintroduction and use of simulation programme VORTEX. The work was done on African wild dog (Lycaon pictus), in the Limpopo Valley Conservancy, South Africa.

Even though it once ranged throughout Africa, currently the African wild dog only has populations larger than 300 individuals only in three countries (Botswana, Tanzania and South Africa).

In 1998, a plan was launched in South Africa for reintroduction of wild dogs into suitable conservation areas and periodic translocations among them.

The researchers used the stochastic population simulation model VORTEX to evaluate the Limpopo Valley Conservancy in the north of South Africa, as a possible reintroduction site for African wild dogs.
The simulations by the researchers showed that the size of the initial population released only had a small effect on the population dynamics. However, when individuals were supplemented and harvested over a longer period the probability of persistence increased.

Number of females breeding, male mortality, and carrying capacity were key factors in the population dynamics, but simulations by the  VORTEX showed that the severity of natural catastrophes had the greatest influence on the extinction risk and inbreeding.

The researchers suggest that the reintroduction program may be successful, if areas are properly secured, the dogs are held in a boma before release, wild animals or at least a mix of wild and captive animals are used for the release and the animals are vaccinated against rabies.  They reiterate that it is essential to continue monitoring followed by modelling efforts to re-evaluate the success of the reintroduction program.

Sunday, February 20, 2011

Alarming Increase of Phosphorous in World’s freshwaters


Warning bells have been rung by Stephen Carpenter of the University of Wisconsin, US and Elena Bennett from McGill University, Canada about rapid increase of phosphorous in world’s freshwaters.    This excess phosphorous in water causes eutrophication. Eutrophication makes the water non-potable. It also leads to blooms of cyanobacteria that are toxic to humans, livestock and fish.
 The researchers found that current levels exceed all planetary boundaries for phosphorous in freshwater.
The concept of planetary boundaries was first introduced by in 2009 by Rockström et al . They categorized a planetary boundary as a human-determined acceptable level of a key global variable.
The researchers say the current alarming level is despite the fact that in some areas of the world we have a phosphorous shortage.
Dr Carpenter says there are some simple solutions to prevent eutrophication. His prescriptions say "Don't apply phosphorous to soils that don't need it and develop technology for recycling phosphorous.
The authors signs off with following conclusions.
Human release of P to the environment is causing widespread eutrophication of surface freshwaters. Yet the global distribution of P is uneven, and soils of many regions remain P-deficient even as soils of other regions are P-saturated (MacDonald et al 2011). Heterogeneity complicates the task of managing to provide both food and high quality freshwater, surely one of the key challenges of environmental management in the 21st century. The planetary boundary for freshwater eutrophication has been crossed while potential boundaries for ocean anoxic events and depletion of phosphate rock reserves loom in the future. The solution to this problem is widespread adoption of better practices for conserving P in agricultural ecosystems, so that P is cycled effectively among soil, crops, livestock and people without contributing to eutrophication of surface waters. At the same time, P-deficient regions of the world should be supplemented by P from P-rich regions. Such subsidies could come in the form of recycled P in fertilizer (e.g. solid P-rich material from manure digestors) or P in food.

Reconsideration of the planetary boundary for phosphorus
Stephen R Carpenter and Elena M Bennett
Environ. Res. Lett. 6 (January-March 2011) 014009
doi:10.1088/1748-9326/6/1/014009

Saturday, February 19, 2011

Species Introduction in Grassland Restoration


New nature by sowing? The current state of species introduction in grassland restoration, and the road ahead
Petter Hedberg and Wiktor Kotowski

Here is a good paper from Polish researchers on restoration ecology. The paper is authored by Dr Petter Hedberg and Dr Wiktor Kotowski. Both of them are from the Department of Plant Ecology and Environmental Conservation, Institute of Botany, University of Warsaw, Poland

In this paper the researchers reviews the current status of species introduction into semi-natural grasslands, and summarizes the results of published literature in this field.

The review shows that restoration through species introduction is an effective method of establishing dispersal limited species but concludes that we are yet to make use of the fact that Functional Diversity can add to restoration.

 The authors say no single study in their  search has followed up species introduction by measuring any of the currently available indices of functional diversity. According to the researchers this approach is necessary to gain knowledge on what traits are likely to be sorted out in species introduction cases in various environments.

Thursday, February 17, 2011

Flagship Species - providing targeted background information in educational institutions might help strengthen appreciation for less attractive animals.


Attitudes towards potential animal flagship species in nature conservation: A survey among students of different educational institutions
Jürg Schlegel and Reto Rupf

Here is a good paper on how students evaluate the concept of flagship species.  The survey was done in Switzerland. It could be replicated elsewhere for better handling of the concept of Flagship species.

Using a standardized questionnaire, a total of 415 students from two different Swiss primary schools, grammar schools and agricultural schools as well as students from a Swiss University of Applied Sciences were asked about their attitudes towards 27 different indigenous wildlife animal species.
Six mammal, five bird, two reptile, four amphibian and ten insect species, all with potential flagship quality, were presented to the students on a color photograph without any further background information.

The students were asked to give individual reasons for species-related affinity or antipathy. Their ability to correctly identify and name each species was also identified.

Butterflies, birds and most mammals were, on average, more appreciated than reptiles, insects and amphibians. Attitudes also varied according to the type of educational institution attended by the students.

There is no significant difference in attitudes to animals between males and females. Females showed significantly higher affinity for 'loveable animals' and a lesser degree of affinity for 'fear-relevant animals'.
The students exhibited higher affinity for species they can identify than for unfamiliar species.

The authors signs off saying that targeted background information in educational institutions might help soften rigid thinking patterns by strengthening appreciation for less attractive animals.

Wednesday, February 16, 2011

Nature Education and Protected Area Management


The role of education in protected area sustainable governance
Violeta Orlovic-Lovren
Violeta Orlovic-Lovren, (2011) "The role of education in protected area sustainable governance", Management of Environmental Quality: An International Journal, Vol. 22 Iss: 1, pp.48 – 58

Education plays a key role in protected area management. This paper is based on the author’s experience in Serbia but has connotations that have relevance elsewhere. The author says the role assigned to education in promoting sustainability by international documents is yet to be applied to national strategies in many countries.

The focus of this paper is to promote a strategic approach and to identify techniques for analysis to be used in development of quality education programs, tailored to specific needs in protected areas and to sustainability goals in a particular social context.

The author uses an adult education approach and social science methodology to come up with a proposal for a research framework and hopes that this will pave way for better understanding of the role of education in improving sustainable protected area governance.

The existing gap in the field is discussed and a brief review of the issues present in Serbia as a country in transition is also given.

The author concludes that the approach detailed in the paper may be modified to specific contexts and goals, and applied with this purpose to other similar social environments, especially in countries in transition within the region. She is sure that this will lead lead to creating more adequate education programs and increased capacities for managing protected areas.

Tuesday, February 15, 2011

Prey Vulnerability can Influence Habitat Use


Foraging in the Landscape of Fear, the Predator’s Dilemma: Where Should I Hunt?
John W. Laundré, Jesús M. M. Calderas and Lucina Hernández 

Here is a good paper that I read recently. It appeared in the open ecology journal and is very fascinating in its implications. I am giving below the abstract as it is an open journal document.

Under predation risk, prey species are more abundant in areas of low predation risk even at the expense of forage quality. As a result two predictions are possible, 1) predators should choose to hunt in areas with fewer but easier to catch prey than areas where they are more abundant but harder to catch; and 2) the frequency of prey species in the diet of predators using low risk areas should be greater than, or at least equal to, the diet of predators using high risk areas. To test these two predictions, we used data on coyote Canis latrans abundance and diet composition from two habitats in the Chihuahuan Desert of Mexico that have different abundances of jackrabbits (Lepus californicus) and rodents. We used the number of coyote scats found in transects in the two areas to assess coyote abundance and analyzed the contents of these scats to determine diet composition. We found significantly more coyote scats/yr (22.6 ± 4.7 (SE) vs. 12.2 ± 2.4 scats/yr, d.f. = 7, paired t = 3.80, P = 0.007) in the habitat with less jackrabbits and more rodents. However, the percent occurrence of jackrabbits (54.3 ± 6.7% vs. 60.1 ± 7.7%) and rodents (32.6 ± 6.5% vs. 30.1 ± 6.0%) in coyote scats did not differ between the two habitats. These results supported both the above cited predictions and the hypothesis that prey vulnerability can influence habitat use by coyotes.

100 Newly Discovered Species in a Single Scholarly Paper


It is raining species in a new scholarly paper.  102 lichenologists from 37 countries took part in the venture that has no parallels.

All the new species are lichens.  Molecular data analyzed by the team show that some characteristics biologists once regarded as minor really carry more importance. Every newly found species got its own Web site, part of the Encyclopedia of Life project.

100,000 fungal species, including 17,500 lichens, have been discovered and named so far. According to scientists there may be a million more species waiting to be noticed by science.

The whole project was coordinated by Field Museum scientist Dr Lumbsch and his colleague Dr Robert Lücking . The scientists hope to form more collaborative ventures in future.

Details appear in the Feb. 18 issue of the journal Phytotaxa.

Monday, February 14, 2011

The Scent of Love


Detection of female mating status using chemical signals and cues
 Melissa L. Thomas
Journal Biological Reviews. Article first published online: 3 MAR 2010

In this fascinating paper author Melissa L. Thomas review evidence that chemical cues and signals are used widely by males to discriminate between mated and unmated females. Melissa also explores the mechanisms by which female odour changes post-mating.

The author says our understanding of the processes driving the evolution of chemical signals is rudimentary in comparison to auditory and visual traits, despite chemical signals being subject to the same kinds of natural and sexual selective forces.

Information content of chemical signals can allow receivers to discriminate conspecifics from heterospecifics, and determine their sex and dominance status as well as a range of other traits.

In this review the author elaborates specifically on the role of pheromones in the discrimination of a female's reproductive status (mated or unmated). Pheromones seem to be ideal indicators of transitory states such as changing reproductive status. Pheromones used for this type of discrimination can either be volatile, airborne pheromones and/or pheromones that require contact between the emitter and receiver.


Friday, February 11, 2011

Conspecifics and Habitat Models


Here is a good paper on habitat model that I ran in to recently. It is a 2008 paper worth a read. The authors say even though researchers attribute limitations in predictive ability of a habitat model to data deficiencies, missing parameters, error introduced by specifications of the statistical model, and natural Variation, few wildlife biologists have incorporated intra- and interspecific interactions (e.g., conspecific attraction, competition, predator-prey relationships) to increase predictive accuracy of habitat models.

The authors reiterate that conspecific attraction can be a primary factor influencing habitat selection in wildlife. It can lead to clustered distributions of wildlife within available habitat, reducing the predictive ability of habitat models based on vegetative and geographic parameters alone.

The authors suggest that wildlife biologists consider incorporating a parameter in habitat models for the clustered distribution of individuals within available habitat and investigate the mechanisms leading to clustered distributions of species, especially conspecific attraction.

Journal of Wildlife Management (2008) Volume: 72, Issue: 1, Publisher: Journal of Wildlife Management, Pages: 331-336

Thursday, February 10, 2011

Flagships


In between my busy hopping I managed to read an excellent paper on flagships.

There is lot of uncertainty in the academic literature about the purpose of flagship species, even though it is frequently used by conservation practitioners to raise funds and awareness for reducing biodiversity loss.

In this paper the authors suggest a new definition that further emphasizes their marketing role and propose an interdisciplinary framework to improve flagship identification, which is based on methodologies from social marketing, environmental economics, and conservation biology. 

The authors recommend that the conservationists should specify the purpose of a campaign before working with the potential target audience to identify the most suitable species, and should monitor the success of their campaigns and feed this back into the marketing process. 

The authors goes on to discuss the return on investment analyses to determine when funds are best spent on high-profile flagships and when raising the profile of other species is more appropriate. 

The authors’ signs off saying that flagship concept can be applied to other aspects of biodiversity, such as priority regions and species sharing specific traits and argue for closer collaboration between researchers and marketing experts to ensure that marketing becomes a mainstream part of the interdisciplinary science of conservation.

Toward a systematic approach for identifying conservation flagships

Diogo Verissimo, Douglas C. MacMillan, Robert J. Smith

Article first published online: 29 NOV 2010 in Conservation Letters